FAU OICE Wiki
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Software at FAU OICE:
3Dscript plugin for Fiji developed at FAU OICE
Fiji – Open source scientific image processing
Huygens – deconvolution by SVI
LAS X – Leica acquisition and image processing software
ZEN – Zeiss acquisition and image processing software
Imaris – Oxford Instruments image processing software
cellSens – Evident acquisition and image processing software
OME – Software environment for image data management
Links to useful resources for the interested microscopist:
ImageJ2 – the next generation of ImageJ including Imglib2 and ImgOps
μManager – open source microscope acquisition control software
CellProfiler – automation of image analysis and quantification pipelines
FPBase – Spectra viewer by Molecular Probes
Cell staining simulation tool by Thermo Scientific
Nyquist calculator by SVI to calculate ideal pixel spacing